publications

My collection of publications.

2024

  1. Exploring nasopharyngeal microbiota profile in children affected by SARS-CoV-2 infection
    Romani, L, Del Chierico, F, Pane, S, Ristori, MV, Pirona, I, Guarrasi, V, Cotugno, N, Bernardi, S, Lancella, L, Perno, CF, and others,
    Microbiology Spectrum 2024

2023

  1. Multi-objective optimization determines when, which and how to fuse deep networks: An application to predict COVID-19 outcomes
    Guarrasi, Valerio, and Soda, Paolo
    Computers in Biology and Medicine 2023
  2. Ecology and Machine Learning-Based Classification Models of Gut Microbiota and Inflammatory Markers May Evaluate the Effects of Probiotic Supplementation in Patients Recently Recovered from COVID-19
    Laterza, Lucrezia, Putignani, Lorenza, Settanni, Carlo Romano, Petito, Valentina, Varca, Simone, De Maio, Flavio, Macari, Gabriele,  Guarrasi, Valerio, Gremese, Elisa, Tolusso, Barbara, and others,
    International Journal of Molecular Sciences 2023
  3. Building an AI-enabled metaverse for intelligent healthcare: opportunities and challenges
    Guarrasi, Valerio, Tronchin, Lorenzo, Caruso, Camillo Maria, Rofena, Aurora, Manni, Guido, Aksu, Fatih, Paolo, Domenico, Iannello, Giulio, Sicilia, Rosa, Cordelli, Ermanno, and others,
    In Ital-IA 2023, Italia Intelligenza Artificiale Thematic Workshops, co-located with the 3rd CINI National Lab AIIS Conference on Artificial Intelligence (Ital IA 2023), Pisa, Italy, May 29-30, 2023 2023
  4. A Deep Learning Approach for Overall Survival Analysis with Missing Values
    Caruso, Camillo Maria,  Guarrasi, Valerio, Ramella, Sara, and Soda, Paolo
    arXiv preprint arXiv:2307.11465 2023
  5. A Deep Learning Approach for Virtual Contrast Enhancement in Contrast Enhanced Spectral Mammography
    Rofena, Aurora,  Guarrasi, Valerio, Sarli, Marina, Piccolo, Claudia Lucia, Sammarra, Matteo, Zobel, Bruno Beomonte, and Soda, Paolo
    arXiv preprint arXiv:2308.00471 2023
  6. Making AI trustworthy in multimodal and healthcare scenarios
    Cordelli, Ermanno,  Guarrasi, Valerio, Iannello, Giulio, Ruffini, Filippo, Sicilia, Rosa, Soda, Paolo, and Tronchin, Lorenzo
    Proceedings of the Ital-IA 2023
  7. Williams–Beuren syndrome shapes the gut microbiota metaproteome
    Marzano, Valeria, Levi Mortera, Stefano, Vernocchi, Pamela, Del Chierico, Federica, Marangelo, Chiara,  Guarrasi, Valerio, Gardini, Simone, Dentici, Maria Lisa, Capolino, Rossella, Digilio, Maria Cristina, and others,
    Scientific Reports 2023
  8. Gut microbiota functional profiling in autism spectrum disorders: bacterial VOCs and related metabolic pathways acting as disease biomarkers and predictors
    Vernocchi, Pamela, Marangelo, Chiara, Guerrera, Silvia, Del Chierico, Federica,  Guarrasi, Valerio, Gardini, Simone, Conte, Federica, Paci, Paola, Ianiro, Gianluca, Gasbarrini, Antonio, and others,
    Frontiers in Microbiology 2023
  9. A graph neural network-based model with Out-of-Distribution Robustness for enhancing Antiretroviral Therapy Outcome Prediction for HIV-1
    Di Teodoro, Giulia, Siciliano, Federico,  Guarrasi, Valerio, Vandamme, Anne-Mieke, Ghisetti, Valeria, Sönnerborg, Anders, Zazzi, Maurizio, Silvestri, Fabrizio, and Palagi, Laura
    arXiv preprint arXiv:2312.17506 2023

2022

  1. Pareto optimization of deep networks for COVID-19 diagnosis from chest X-rays
    Guarrasi, Valerio, D’Amico, Natascha Claudia, Sicilia, Rosa, Cordelli, Ermanno, and Soda, Paolo
    Pattern Recognition 2022
  2. Gut microbiota ecology and inferred functions in children with ASD compared to neurotypical subjects
    Vernocchi, Pamela, Ristori, Maria Vittoria, Guerrera, Silvia,  Guarrasi, Valerio, Conte, Federica, Russo, Alessandra, Lupi, Elisabetta, Albitar-Nehme, Sami, Gardini, Simone, Paci, Paola, and others,
    Frontiers in Microbiology 2022
  3. Convolutional neural networks for automated classification of prostate multiparametric magnetic resonance imaging based on image quality
    Cipollari, Stefano,  Guarrasi, Valerio, Pecoraro, Martina, Bicchetti, Marco, Messina, Emanuele, Farina, Lorenzo, Paci, Paola, Catalano, Carlo, and Panebianco, Valeria
    Journal of Magnetic Resonance Imaging 2022
  4. Optimized fusion of CNNs to diagnose pulmonary diseases on chest X-Rays
    Guarrasi, Valerio, and Soda, Paolo
    In International Conference on Image Analysis and Processing 2022
  5. The relationship between pediatric gut microbiota and SARS-CoV-2 infection
    Romani, Lorenza, Del Chierico, Federica, Macari, Gabriele, Pane, Stefania, Ristori, Maria Vittoria,  Guarrasi, Valerio, Gardini, Simone, Pascucci, Giuseppe Rubens, Cotugno, Nicola, Perno, Carlo Federico, and others,
    Frontiers in cellular and infection microbiology 2022
  6. Gut microbiota functional traits, blood PH, and anti-GAD antibodies concur in the clinical characterization of T1D at onset
    Del Chierico, Federica, Conta, Giorgia, Matteoli, Maria Cristina, Fierabracci, Alessandra, Reddel, Sofia, Macari, Gabriele, Gardini, Simone,  Guarrasi, Valerio, Levi Mortera, Stefano, Marzano, Valeria, and others,
    International Journal of Molecular Sciences 2022
  7. Comparison of current methods for anti-dsDNA antibody detection and reshaping diagnostic strategies
    Infantino, Maria, Palterer, Boaz, Previtali, Giulia, Alessio, Maria-Grazia, Villalta, Danilo, Carbone, Teresa, Platzgummer, Stefan, Paura, Giusi, Castiglione, Caterina, Fabris, Martina, and others,
    Scandinavian Journal of Immunology 2022
  8. Comparison of current methods for anti-dsDNA antibody detection and reshaping diagnostic strategies
    Previtali, Giulia, BERGAMO, ATS, Alessio, Mariagrazia, Fabris, Martina, Pesce, Giampaola, Cinquanta, Luigi,  Guarrasi, Valerio, Manfredi, Mariangela, Dio, Nuovo Ospedale San Giovanni, Bizzaro, Nicola, and others,
    2022
  9. A multimodal ensemble driven by multiobjective optimisation to predict overall survival in non-small-cell lung cancer
    Caruso, Camillo Maria,  Guarrasi, Valerio, Cordelli, Ermanno, Sicilia, Rosa, Gentile, Silvia, Messina, Laura, Fiore, Michele, Piccolo, Claudia, Beomonte Zobel, Bruno, Iannello, Giulio, and others,
    Journal of Imaging 2022
  10. Functional and taxonomic traits of the gut microbiota in type 1 diabetes children at the onset: a metaproteomic study
    Levi Mortera, Stefano, Marzano, Valeria, Vernocchi, Pamela, Matteoli, Maria Cristina,  Guarrasi, Valerio, Gardini, Simone, Del Chierico, Federica, Rapini, Novella, Deodati, Annalisa, Fierabracci, Alessandra, and others,
    International Journal of Molecular Sciences 2022
  11. Multimodal explainability via latent shift applied to COVID-19 stratification
    Guarrasi, Valerio, Tronchin, Lorenzo, Albano, Domenico, Faiella, Eliodoro, Fazzini, Deborah, Santucci, Domiziana, and Soda, Paolo
    arXiv preprint arXiv:2212.14084 2022
  12. Sustainable AI: inside the deep, alongside the green
    Conte, Francesco, Cordelli, Ermanno,  Guarrasi, Valerio, Iannello, Giulio, Sicilia, Rosa, Soda, Paolo, Tortora, Matteo, and Tronchin, Lorenzo
    2022

2021

  1. Fecal microbiota signatures of insulin resistance, inflammation, and metabolic syndrome in youth with obesity: a pilot study
    Del Chierico, Federica, Manco, Melania, Gardini, Simone,  Guarrasi, Valerio, Russo, Alessandra, Bianchi, Marzia, Tortosa, Valentina, Quagliariello, Andrea, Shashaj, Blegina, Fintini, Danilo, and others,
    Acta diabetologica 2021
  2. Nasopharyngeal microbiota in hospitalized children with Bordetella pertussis and Rhinovirus infection
    Tozzi, AE, Del Chierico, F, Pandolfi, E, Reddel, S, Gesualdo, F, Gardini, S, Guarrasi, V, Russo, L, Croci, I, Campagna, I, and others,
    Scientific Reports 2021
  3. AIforCOVID: Predicting the clinical outcomes in patients with COVID-19 applying AI to chest-X-rays. An Italian multicentre study
    Soda, Paolo, D’Amico, Natascha Claudia, Tessadori, Jacopo, Valbusa, Giovanni,  Guarrasi, Valerio, Bortolotto, Chandra, Akbar, Muhammad Usman, Sicilia, Rosa, Cordelli, Ermanno, Fazzini, Deborah, and others,
    Medical image analysis 2021
  4. Hepatitis C diagnosis and treatment in people who use drugs: mind the gap in the linkage to care.
    Taibi, C, Luzzitelli, I, Comandini, U Visco, Girardi, E, Monacelli, G, Rapisarda, LM, Garbuglia, AR, Minosse, C, Guarrasi, V, Vincenzi, L, and others,
    European Review for Medical & Pharmacological Sciences 2021
  5. Temporal network motifs: Models, limitations, evaluation
    Liu, Penghang,  Guarrasi, Valerio, and Sarıyüce, Ahmet Erdem
    IEEE Transactions on Knowledge and Data Engineering 2021
  6. A multi-expert system to detect COVID-19 cases in X-ray images
    Guarrasi, Valerio, D’Amico, Natascha Claudia, Sicilia, Rosa, Cordelli, Ermanno, and Soda, Paolo
    In 2021 IEEE 34th International Symposium on Computer-Based Medical Systems (CBMS) 2021
  7. Assessing the impact of data-driven limitations on tracing and forecasting the outbreak dynamics of COVID-19
    Fiscon, Giulia, Salvadore, Francesco,  Guarrasi, Valerio, Garbuglia, Anna Rosa, and Paci, Paola
    Computers in Biology and Medicine 2021

2020

  1. Human papillomavirus infections in cervical samples from HIV-positive women: evaluation of the presence of the nonavalent HPV genotypes and genetic diversity
    Sias, Catia,  Guarrasi, Valerio, Minosse, Claudia, Lapa, Daniele, Nonno, Franca Del, Capobianchi, Maria Rosaria, Garbuglia, Anna Rosa, Del Porto, Paola, and Paci, Paola
    Frontiers in microbiology 2020